ipycytoscape

Version: 1.3.2

Visualize graphs using Cytoscape.js in a Jupyter Notebook. You can either create graphs using the ipycytoscape API or create them from:

Quickstart

To get started with ipycytoscape, install with pip:

pip install ipycytoscape

or with conda/mamba:

conda install -c conda-forge ipycytoscape
# or with mamba
mamba install -c conda-forge ipycytoscape

If you are using JupyterLab 1.x or 2.x you will also need to follow the instructions in JupyterLab Installation.

Simple Example

from ipycytoscape import CytoscapeWidget
import networkx as nx
G = nx.complete_graph(5)
cyto = CytoscapeWidget()
cyto.graph.add_graph_from_networkx(G)
display(cyto)

joseberlines created a series of blog posts explaining key points on the functioning of ipycytoscape:

Learning and visualising Graphs with ipycytoscape Part_1

The series of notebook examples “Ipycytoscape from Scratch” found on this repository maps to these blog posts.

Contents

Graph Creation

Customization and Styling

Advanced Usage

Development